My Gut: One Year Later

It’s time to take a look at the progress I’ve made since I took what I believe were life-saving measures last year.

Quick synopsis, if you haven’t been following my blog:

I was given Cipro when my appendix ruptured. After Cipro, along with a bunch of other problems, I developed out-of-control IBS symptoms. It got to the point where I was starting to develop bowel incontinence, and the lab botched the c-diff test… not that I would have wanted to follow the currently accepted protocol for c-diff, which is MORE antibiotics. I went rogue, so-to-speak, and read as much as I could on fecal microbiota transplants. Knowing that I wouldn’t be able to get it done in a medical setting, I did it myself at home using a donation from a physically fit younger friend as well as milk from a healthy nursing mom with a healthy baby. I didn’t do the transplant in a vacuum, either. I read about fiber, and I increased my fiber up to about 4x the RDA from as large a variety of sources as I could. I’m not going to say it was pleasant. It wasn’t. However, my bowel no longer bothers me UNLESS I eat sugar. When I eat sugar, my gut blows up like a balloon… so, no sugar. Raw honey seems to be fine.

Now, onto the good stuff. Here are the results of the samples I took before and after the transplant. Keeping in mind that my before sample was frozen while I waited for the money to do the test, which I honestly think has no bearing on my results because the DNA, which is what was sequenced, would remain intact. The samples were taken several months apart.

2014 before and after HBM/FMT

As you can see, my Firmicutes started out ok, but in every other category, I was a mess. Even after, I was still a mess, but the Bacteroidetes at least exist now. Verrucomicrobia remain extremely high, which is something for me to research when I have more time, but I’d like to send in another sample this winter to see what kind of equilibrium my gut has managed before making any more major changes to my diet.

Note: the “rare taxa” notes are not necessarily new species, but ones in quantaties large enough to be detected. I know I was a mycoplasma carrier prior to this experiment.

Also of note: there is apparently one Akkermansia strain that is hardy against broad-spectrum antibiotics, and Cipro may explain why my profiles are dominated by Akkermansia. It survives where other microbes perish. It’s the microbe that exists in thin people, but at 5-6%, not anywhere near my proportion, and it can’t be the only factor in thinness, because my weight has been swinging between 115-150 lbs. without any good reason (I have tiny bones and I’m only 5’3″, so ideally I’d weigh about 125 lbs.).

After I get test results back for the next round, I’ll try to do a more detailed report of what’s living in my gut and how the past year has influenced it.